Texifier currently only supports makeindex to compile indices and glossaries. When auto-sense is on, it will attempt to compile each of the index type you have used in the document.
These can be hand-selected in manual typeset.
In the manual mode, once you’ve selected a list of indices for a document, these are remembered by Texifier for future use for that document as part of the document’s persisted workspace state.
The Windows variant of this article will be updated in due course. To try out Texifier for Windows before it is publicly released, please sign up for a beta.